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| Peanut-package | Parameterized Bayesian Networks, Abstract Classes |
| as.Pnet | A Parameterized Bayesian network |
| as.Pnode | A Parameterized Bayesian network node |
| BuildAllTables | Builds the conditional probability table for a Pnode |
| BuildNetManifest | Builds a network manifest from a list of Pnets |
| BuildNodeManifest | Builds a table describing a set of Pnodes |
| BuildTable | Builds the conditional probability table for a Pnode |
| calcExpTables | Calculate expected tables for a parameterized network |
| calcPnetLLike | Calculates the log likelihood for a set of data under a Pnet model |
| ClearWarehouse | A cache for Pnets or Pnodes |
| defaultAlphas | Reshapes alpha or beta vector based on rule and parents |
| defaultBetas | Reshapes alpha or beta vector based on rule and parents |
| GEMfit | Fits the parameters of a parameterized network using the GEM algorithm |
| GetPriorWeight | Gets the weight to be associated with the prior table during EM learning |
| is.Pnet | A Parameterized Bayesian network |
| is.PnetWarehouse | A cache for Pnets or Pnodes |
| is.Pnode | A Parameterized Bayesian network node |
| is.PnodeWarehouse | A cache for Pnets or Pnodes |
| maxAllTableParams | Find optimal parameters of Pnet or Pnode to match expected tables |
| maxAllTableParams.default | Find optimal parameters of Pnet or Pnode to match expected tables |
| maxCPTParam | Find optimal parameters of Pnet or Pnode to match expected tables |
| Omega2Pnet | Constructs a parameterized network from an Omega matrix. |
| Peanut | Parameterized Bayesian Networks, Abstract Classes |
| Pnet | A Parameterized Bayesian network |
| Pnet.default | A Parameterized Bayesian network |
| Pnet2Omega | Constructs an Omega matrix from a parameterized network. |
| Pnet2Qmat | Makes an augmented Q-matrix from a collection of parameterized nets |
| PnetAdjoin | Merges (or separates) two Pnets with common variables |
| PnetDescription | Gets the title or comments associated with a parameterized network. |
| PnetDescription<- | Gets the title or comments associated with a parameterized network. |
| PnetDetach | Merges (or separates) two Pnets with common variables |
| PnetFindNode | Finds nodes in a parameterized network. |
| PnetHub | Returns the name of the hub net if this is a spoke net. |
| PnetHub<- | Returns the name of the hub net if this is a spoke net. |
| PnetMakeStubNodes | Creates (or removes) references to nodes in a network |
| PnetName | Gets or Sets the name of a Netica network. |
| PnetName<- | Gets or Sets the name of a Netica network. |
| PnetPathname | Returns the path associated with a network. |
| PnetPathname<- | Returns the path associated with a network. |
| PnetPnodes | Returns a list of Pnodes associated with a Pnet |
| PnetPnodes<- | Returns a list of Pnodes associated with a Pnet |
| PnetPriorWeight | Gets the weight to be associated with the prior table during EM learning |
| PnetPriorWeight<- | Gets the weight to be associated with the prior table during EM learning |
| PnetRemoveStubNodes | Creates (or removes) references to nodes in a network |
| PnetTitle | Gets the title or comments associated with a parameterized network. |
| PnetTitle<- | Gets the title or comments associated with a parameterized network. |
| Pnode | A Parameterized Bayesian network node |
| PnodeAlphas | Access the combination function slope parameters for a Pnode |
| PnodeAlphas.default | Access the combination function slope parameters for a Pnode |
| PnodeAlphas<- | Access the combination function slope parameters for a Pnode |
| PnodeAlphas<-.default | Access the combination function slope parameters for a Pnode |
| PnodeBetas | Access the combination function slope parameters for a Pnode |
| PnodeBetas<- | Access the combination function slope parameters for a Pnode |
| PnodeDescription | Gets the title or Description associated with a parameterized node node. |
| PnodeDescription<- | Gets the title or Description associated with a parameterized node node. |
| PnodeLabels | Lists or changes the labels associated with a parameterize node. |
| PnodeLabels<- | Lists or changes the labels associated with a parameterize node. |
| PnodeLink | Accesses the link function associated with a Pnode |
| PnodeLink<- | Accesses the link function associated with a Pnode |
| PnodeLinkScale | Accesses the link function scale parameter associated with a Pnode |
| PnodeLinkScale<- | Accesses the link function scale parameter associated with a Pnode |
| PnodeLnAlphas | Access the combination function slope parameters for a Pnode |
| PnodeLnAlphas<- | Access the combination function slope parameters for a Pnode |
| PnodeName | Gets or sets name of a parameterized node. |
| PnodeName<- | Gets or sets name of a parameterized node. |
| PnodeNet | Returns a list of Pnodes associated with a Pnet |
| PnodeNumParents | Aliases for generic Bayesian network functions. |
| PnodeNumStates | Aliases for generic Bayesian network functions. |
| PnodeParentNames | Aliases for generic Bayesian network functions. |
| PnodeParents | Gets or sets the parents of a parameterized node. |
| PnodeParents<- | Gets or sets the parents of a parameterized node. |
| PnodeParentTvals | Fetches a list of numeric variables corresponding to parent states |
| PnodePriorWeight | Gets the weight to be associated with the prior table during EM learning |
| PnodePriorWeight<- | Gets the weight to be associated with the prior table during EM learning |
| PnodeQ | Accesses a state-wise Q-matrix associated with a Pnode |
| PnodeQ<- | Accesses a state-wise Q-matrix associated with a Pnode |
| PnodeRules | Accesses the combination rules for a Pnode |
| PnodeRules<- | Accesses the combination rules for a Pnode |
| PnodeStateDescriptions | Accessors for the titles and descriptions associated with states of a parameterized node. |
| PnodeStateDescriptions<- | Accessors for the titles and descriptions associated with states of a parameterized node. |
| PnodeStates | Accessor for states of a parameterized node. |
| PnodeStates<- | Accessor for states of a parameterized node. |
| PnodeStateTitles | Accessors for the titles and descriptions associated with states of a parameterized node. |
| PnodeStateTitles<- | Accessors for the titles and descriptions associated with states of a parameterized node. |
| PnodeStateValues | Accesses the numeric values associated with the state of a parameterized node. |
| PnodeStateValues<- | Accesses the numeric values associated with the state of a parameterized node. |
| PnodeTitle | Gets the title or Description associated with a parameterized node node. |
| PnodeTitle<- | Gets the title or Description associated with a parameterized node node. |
| Qmat2Pnet | Makes or adjusts parameterized networks based on augmented Q-matrix |
| topsort | Topologically sorts the rows and columns of an Omega matrix |
| Warehouse | A cache for Pnets or Pnodes |
| WarehouseData | Manipulates the manifest for a warehouse |
| WarehouseFetch | A cache for Pnets or Pnodes |
| WarehouseFree | A cache for Pnets or Pnodes |
| WarehouseMake | A cache for Pnets or Pnodes |
| WarehouseManifest | Manipulates the manifest for a warehouse |
| WarehouseManifest<- | Manipulates the manifest for a warehouse |
| WarehouseSupply | A cache for Pnets or Pnodes |